Published papers include 'Tutorial on survival modeling with applications to omics data' (Bioinformatics, 2024), 'Robust scoring of selective drug responses for patient-tailored therapy selection' (Nat Protoc, 2024), etc.
Research Experience
Group leader in Computational Systems Medicine; research projects involve AI and data integration to define new macrophage/immune targets, identification and characterization of drug-resistant cell lineages with DNA barcoding, multi-omics prediction of treatment outcomes for precision oncology applications, etc.
Background
Research interests include integrating multi-omics profiling and clinical information from cancer patients using mathematical and statistical approaches such as machine learning and network modeling. The goal is to optimize treatment outcomes for individual patients using maximally predictive models and minimal biomarker signatures, enabling real-time and cost-effective routine diagnostics and prognosis.
Miscellany
Funded by several organizations; developed Nextpie: a web-based reporting tool and database for reproducible Nextflow pipelines.