Published multiple papers, including preprints on CoLeTra and TopoMortar. Additionally, developed application-specific image segmentation methods (e.g., segmentation of brain lesions and hemispheres in preclinical MRI).
Research Experience
Developed the first data augmentation transformation (CoLeTra) focused on improving topology accuracy, and created the first dataset (TopoMortar) specifically designed to assess whether topology-enhancing methods for image segmentation do actually incorporate prior topological knowledge (preprint). During my Ph.D., I developed a loss function and a filter pruning method for biomedical image segmentation, wrote a review on transfer learning for brain MRI, and participated in a challenge to predict fluid intelligence score from MR images.
Education
Focused on deep learning and biomedical image segmentation during Ph.D.
Background
Currently a postdoc researcher at the section for Visual Computing at DTU Compute (Denmark) with Anders Bjorholm Dahl as my supervisor. Research focuses on deep learning, image segmentation, and topology.
Miscellany
Vast experience with Python, Pytorch, Julia, and Linux. Extensive work with various types of images, including MRI, CT/X-ray (clinical and synchrotron), and electron-microscopy.