Integrative neurocybernetic modeling in the era of large-scale neuroscience

๐Ÿ“… 2026-04-26
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Current large-scale neuroscience data remain highly fragmented, lacking a unified framework to elucidate the closed-loop coupling mechanisms among brain, body, and environment in behavior generation. This work proposes an integrative neuro-cybernetic modeling paradigm that conceptualizes the brain as a controller pursuing latent goals. By synthesizing multi-scale neural recordings, behavioral measurements, perturbations, and connectomic anatomical constraints, it constructs interpretable nonlinear state-space models. The approach incorporates meta-dynamics extensions, hybrid open- and closed-loop training, and knowledge distillation strategies to identify shared dynamical structures across experiments and individuals, disentangle individual variability, infer behavioral objectives, and achieve few-shot generalization. This framework establishes a mechanistic and generalizable computational foundation for uncovering the organizing principles of neural-behavioral systems.

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๐Ÿ“ Abstract
Large-scale neuroscience is generating rich datasets across animals, brain areas and behavioral contexts, yet our modeling efforts remains fragmented across isolated experiments. We argue that understanding behavior requires integrative neurocybernetic models: understandable dynamical models that capture the closed-loop coupling of brain, body and environment, treat the brain as a controller pursuing latent objectives, represent structured variation across scales, and scale to heterogeneous datasets. Such models shift the goal from predicting neural recordings in isolation to inferring the organizing principles that govern neural and behavioral dynamics. We outline a practical route toward this goal by combining nonlinear state-space models and meta-dynamical extensions with scalable inference, knowledge distillation, mixed open- and closed-loop training, and connectomics-informed architectures. By pooling complementary constraints from recordings, behavior, perturbations and anatomy, integrative neurocybernetic models can provide statistical amplification, few-shot generalization, and mechanistic insight into shared dynamical structure, individual variation, and the control objectives that govern behavior. This agenda offers a model-centric path from fragmented data to a mechanistic science of how brains produce behavior.
Problem

Research questions and friction points this paper is trying to address.

integrative modeling
neurocybernetics
large-scale neuroscience
behavioral dynamics
closed-loop systems
Innovation

Methods, ideas, or system contributions that make the work stand out.

integrative neurocybernetic modeling
nonlinear state-space models
meta-dynamical extensions
knowledge distillation
connectomics-informed architectures
Il Memming Park
Il Memming Park
Group Leader, Champalimaud Research; Visiting Associate Professor, Stony Brook University
computational neurosciencetheoretical neurosciencepoint processmachine learningdynamical
A
Ayesha Vermani
Champalimaud Centre for the Unknown, Champalimaud Foundation, Lisbon, Portugal
Gonzalo G. de Polavieja
Gonzalo G. de Polavieja
Champalimaud Research
collective behaviorAlgebraic Machine LeaningAI4ScienceBehaviorAINeuroAI
J
Juan รlvaro Gallego
Champalimaud Centre for the Unknown, Champalimaud Foundation, Lisbon, Portugal
K
Kathleen Esfahany
Harvard University, Cambridge, MA, USA
Shreya Saxena
Shreya Saxena
Assistant Professor, Wu Tsai Institute and Department of Biomedical Engineering, Yale University
Computational NeuroscienceMachine LearningControl Theory
Michael Orger
Michael Orger
Champalimaud Neuroscience Programme
Auke Ijspeert
Auke Ijspeert
EPFL, Ecole Polytechnique Fรฉdรฉrale de Lausanne, Switzerland
bioroboticsroboticscomputational neurosciencemotor controllocomotion
M
Matthew Dowling
Champalimaud Centre for the Unknown, Champalimaud Foundation, Lisbon, Portugal
D
Daniel McNamee
Champalimaud Centre for the Unknown, Champalimaud Foundation, Lisbon, Portugal
Srinivas C. Turaga
Srinivas C. Turaga
HHMI Janelia Research Campus
machine learningneuroscienceconnectomicsdeep learningcomputational microscopy
Z
Zachary Mainen
Champalimaud Centre for the Unknown, Champalimaud Foundation, Lisbon, Portugal
J
Joseph J. Paton
Champalimaud Centre for the Unknown, Champalimaud Foundation, Lisbon, Portugal
A
Alfonso Renart
Champalimaud Centre for the Unknown, Champalimaud Foundation, Lisbon, Portugal