B-MIM: Biased Masked Image Modeling for Generalizable Segmentation of Fine-Grained Anatomical Structures

📅 2026-08-25
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🤖 AI Summary
为提高细粒度解剖结构分割的泛化能力,本文提出B-MIM方法,通过减少全局语义对齐来优先局部补丁重建,从而增强3D Swin Transformer编码器捕捉高频形态细节的能力。
📝 Abstract
Self-supervised pretraining enables transferable representations for medical imaging, yet most CT encoders remain biased toward coarse semantic understanding, limiting their sensitivity to fine-grained anatomical structures such as vessels or small tumors. In this paper, we introduce Biased Masked Image Modeling (B-MIM), a modification of the iBOT objective that stochastically reduces global semantic alignment to prioritize local patch reconstruction. This bias encourages the encoder to capture high-frequency morphological details and structural continuity. We curate a multi-institutional CT abdominal dataset of 9,955 filtered studies from 17 public sources and pretrain a 3D Swin Transformer backbone using B-MIM. Across inter-dataset experiments on liver vessel segmentation, the proposed encoder improves topological fidelity (clDice) and achieves competitive Dice scores in tumor segmentation, compared to fully fine-tuned baselines, despite updating only a fraction of the parameters. Our results suggest that reducing global semantic pressure during pretraining enhances generalization to intricate anatomical structures.
Problem

Research questions and friction points this paper is trying to address.

CT encoders
coarse semantic understanding
fine-grained anatomical structures
self-supervised pretraining
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