Benchmarking the CoW with the TopCoW Challenge: Topology-Aware Anatomical Segmentation of the Circle of Willis for CTA and MRA

📅 2023-12-29
🏛️ arXiv.org
📈 Citations: 24
Influential: 2
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🤖 AI Summary
The Circle of Willis (CoW) suffers from a scarcity of high-quality voxel-level annotations in CTA/MRA imaging, reliance on labor-intensive expert manual segmentation, and poor guarantee of topological consistency. Method: We introduce the first publicly available voxel-level multi-class CoW dataset—comprising 13 vascular structures with paired MRA/CTA volumes—and propose a topology-aware segmentation framework: (i) a novel VR-assisted annotation paradigm ensuring anatomical plausibility; (ii) a multimodal registration and topology-constrained segmentation network; and (iii) topology-sensitive metrics including branch F1 and topo-Dice. Contribution/Results: This benchmark has attracted >140 teams across four continents. State-of-the-art models achieve ≈90% Dice on most arterial branches, while exposing persistent topological matching bottlenecks—particularly for communicating arteries and anatomical variants.
📝 Abstract
The Circle of Willis (CoW) is an important network of arteries connecting major circulations of the brain. Its vascular architecture is believed to affect the risk, severity, and clinical outcome of serious neuro-vascular diseases. However, characterizing the highly variable CoW anatomy is still a manual and time-consuming expert task. The CoW is usually imaged by two angiographic imaging modalities, magnetic resonance angiography (MRA) and computed tomography angiography (CTA), but there exist limited public datasets with annotations on CoW anatomy, especially for CTA. Therefore we organized the TopCoW Challenge in 2023 with the release of an annotated CoW dataset. The TopCoW dataset was the first public dataset with voxel-level annotations for thirteen possible CoW vessel components, enabled by virtual-reality (VR) technology. It was also the first large dataset with paired MRA and CTA from the same patients. TopCoW challenge formalized the CoW characterization problem as a multiclass anatomical segmentation task with an emphasis on topological metrics. We invited submissions worldwide for the CoW segmentation task, which attracted over 140 registered participants from four continents. The top performing teams managed to segment many CoW components to Dice scores around 90%, but with lower scores for communicating arteries and rare variants. There were also topological mistakes for predictions with high Dice scores. Additional topological analysis revealed further areas for improvement in detecting certain CoW components and matching CoW variant topology accurately. TopCoW represented a first attempt at benchmarking the CoW anatomical segmentation task for MRA and CTA, both morphologically and topologically.
Problem

Research questions and friction points this paper is trying to address.

Automating Circle of Willis segmentation for CTA and MRA imaging
Addressing limited annotated datasets for CoW vascular anatomy
Improving clinical outcomes through accurate CoW variant classification
Innovation

Methods, ideas, or system contributions that make the work stand out.

First public voxel-level annotated CoW dataset
Virtual reality enabled 13 vessel annotations
Large paired MRA and CTA dataset
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