Machine learning kinetics from molecular dynamics data

📅 2026-09-15
📈 Citations: 0
Influential: 0
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🤖 AI Summary
本文综述了从分子模拟数据中估计承诺因子及动力学统计的方法,特别强调自监督学习方法,并探讨了这些方法的理论基础和应用潜力。
📝 Abstract
Most molecular transitions occur on timescales far beyond direct molecular dynamics simulations. The committor, the probability that a configuration reaches a product state before a reactant state, is a central kinetic statistic, providing a mechanism-independent reaction coordinate and a foundation for transition path theory and the calculation of rates. This review surveys modern approaches for estimating the committor and related kinetic statistics from molecular simulations, with an emphasis on self-supervised methods that learn solutions of their defining dynamical equations rather than relying on labeled shooting data. We develop a common operator viewpoint connecting generator-based partial differential equations, variational principles, Markov state models, dynamical Galerkin approximation, and neural networks. Empirical and theoretical evidence points to the efficiency of these methods. We provide theoretical and practical guidance for realizing their full potential in applications, including strategies for treating non-Markovian effects and for sampling. We conclude by identifying opportunities for further research, including connections to reinforcement learning and generative modeling.
Problem

Research questions and friction points this paper is trying to address.

molecular dynamics
committor
kinetic statistics
Innovation

Methods, ideas, or system contributions that make the work stand out.

self-supervised learning
committor
Markov state models
neural networks
dynamical Galerkin approximation
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J
Jonathan Weare
Courant Institute School of Mathematics, Computing, and Data Science, New York University, New York, New York 10012, United States
A
Aaron R. Dinner
Department of Chemistry and James Franck Institute, University of Chicago, Chicago, Illinois 60637, United States