Covariate-localized False Discovery Rates

๐Ÿ“… 2026-09-08
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็ ”็ฉถๆๅ‡บไธ€็งๅŸบไบŽ้žๅ‚ๆ•ฐ้ซ˜ๆ–ฏๆททๅˆๆจกๅž‹ๅ’Œๆƒ้‡ๅฑ€้ƒจ้ข„ๆต‹้€’ๅฝ’็ฎ—ๆณ•็š„ๆ–นๆณ•๏ผŒไปฅไผฐ่ฎกๅๅ˜้‡ไพ่ต–ไธ‹็š„ๅฑ€้ƒจ้”™่ฏฏๅ‘็Žฐ็އ๏ผŒๆ้ซ˜ๅคš้‡ๅ‡่ฎพๆฃ€้ชŒ็š„ๆ•ˆ่ƒฝๅ’Œ่งฃ้‡Šๆ€งใ€‚
๐Ÿ“ Abstract
We introduce a flexible model for covariate-dependent multiple testing which can be encoded using a nonparametric Gaussian mixture model. Weight-localized predictive recursion (PRx), a new development in the methodology of Newton's predictive recursion algorithm, is then leveraged to estimate the components of this mixture model, allowing for recovery of the covariate-localized false discovery rate $\text{Pr}(H_i = 0|z_i,x_i)$ using a single, unified algorithm. This quantity represents the most direct extension of Efron's local false discovery rate to the covariate-dependent setting, and admits provable Bayesian FDR control properties under simple rejection rules. We introduce several procedures for estimating and thresholding the local false discovery rate, and show using various simulations and a real-data example that our procedures lead to increased power, tighter Bayesian FDR control, and more interpretable rejections. We furthermore show that this holds for fixed and randomized hypothesis labels, indicating that our proposed methods perform well under both frequentist and Bayesian interpretations of multiple testing.
Problem

Research questions and friction points this paper is trying to address.

Covariate-dependent multiple testing
False discovery rate
Predictive recursion
Innovation

Methods, ideas, or system contributions that make the work stand out.

covariate-localized false discovery rate
nonparametric Gaussian mixture model
weight-localized predictive recursion (PRx)
Bayesian FDR control
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Jonathan Lin
Department of Statistical Science, Duke University, Durham, NC
Surya Tokdar
Surya Tokdar
Statistical Science, Duke University
StatisticsBayesian nonparametricsGaussian processes