SIFTING: A Novel LLM-Based Framework for Structured and Transparent Information Extraction from Clinical Free-Text Reports, with Application to Tumor Staging in Lung Cancer

📅 2026-09-07
📈 Citations: 0
Influential: 0
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🤖 AI Summary
本文提出SIFTING框架,结合大语言模型与结构化提示解决临床自由文本报告中信息提取不透明问题,应用于肺癌分期准确率达90%。
📝 Abstract
Background: Large language models (LLMs) show promise for extracting information from clinical free-text documents, but their outputs are often unstructured and lack traceability, complicating validation and adoption in clinical workflows. In this work we introduce SIFTING, an LLM-based framework designed to address these shortcomings. Methods: SIFTING combines the language comprehension capabilities of LLMs with segment-level processing and structured prompts with strict output control, linking findings to the source text to enable both accurate and transparent information extraction. To demonstrate its capabilities, we applied the framework to the task of extracting tumor T-stage information from 130 lung cancer radiology reports (SIFTING-T-stage). A compact 4-bit quantized version of the open-source LLM Llama-3.3-70B (35 GB) was used in a fully self-hosted setup, providing full control over data and model. Performance was evaluated against a reference standard created by four clinical experts and compared with a range of LLMs as used in a conventional single-prompt approach, using bootstrap resampling to estimate confidence intervals. Results: SIFTING-T-stage achieved an accuracy of 90% (95% CI: 84-95) against the reference standard. We found its performance to be comparable to even the largest state-of-the-art LLMs with reasoning capabilities and to be interchangeable with clinical experts (p<0.001), while at the same time offering full traceability through source text references. Conclusion: SIFTING enables accurate, structured, and traceable information extraction from clinical free-text documents. It ensures data control, reproducibility, and verifiable outputs that can support clinical validation and workflow integration.
Problem

Research questions and friction points this paper is trying to address.

Large language models
Information extraction
Clinical free-text documents
Traceability
Validation
Innovation

Methods, ideas, or system contributions that make the work stand out.

SIFTING
segment-level processing
structured prompts
traceability
4-bit quantization
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