Connectome-to-Function: Conditional Generative Latent Representations for Reservoir Computing

๐Ÿ“… 2026-09-05
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๐Ÿ“ Abstract
Connectomes, graph-level maps of neurons and their synaptic connections, provide a structural basis for understanding how brain circuits support function and computation. However, mapping connectome structure to computation remains difficult because these graphs are high-dimensional, sparse, and sensitive to local structural variation. Existing approaches often depend on hand-crafted structural descriptors or task-specific predictors, which limits their ability to represent connectomes in a form that is both generative and functionally meaningful. We propose a conditional generative latent framework that encodes connectome graphs into a compact structural space while using available node-level conditions to guide reconstruction and generation. From this space, the model can reconstruct observed connectivity with a mean edge-reconstruction AUC up to 0.910 and generate new candidate connectomes, enabling a unified analysis of graph structure and computational behavior. Using connectome-derived graphs as recurrent computational substrates, we found that the learned latent space captures functional variation across reservoir-computing experiments, with cross-validated $R^2$ values up to approximately 0.87. Interpretability analysis further revealed task-specific structural mechanisms: in our examples, memory performance is associated with reciprocal recurrent connectivity, whereas prediction and classification are more strongly associated with spectral properties of the recurrent network. These findings suggest an AI-for-science approach to linking neural connectivity to computation and provide a generative and interpretable basis for studying how distinct structural mechanisms shape computational capacity.
Problem

Research questions and friction points this paper is trying to address.

connectome
graph
computation
structural variation
generative
Innovation

Methods, ideas, or system contributions that make the work stand out.

conditional generative latent framework
connectome graphs
reconstruction and generation
functional variation
reservoir computing
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