Learning Ordered Representations in Latent Space for Intrinsic Dimension Estimation via Principal Component Autoencoder

πŸ“… 2026-01-27
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πŸ€– AI Summary
This work addresses the challenge that nonlinear autoencoders often fail to learn ordered latent representations with interpretable variance, leading to inaccurate intrinsic dimensionality estimation. To overcome this limitation, the authors propose a novel autoencoder framework that naturally extends the ordered, variance-preserving properties of principal component analysis (PCA) to nonlinear settings by incorporating non-uniform β„“Β² regularization and an isometry constraint. This approach jointly optimizes the structure of the latent space and the distribution of variance across its dimensions, thereby preserving the model’s capacity for nonlinear dimensionality reduction while yielding an ordered latent representation. As a result, the method significantly improves the accuracy of intrinsic dimensionality estimation compared to conventional nonlinear autoencoders.

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πŸ“ Abstract
Autoencoders have long been considered a nonlinear extension of Principal Component Analysis (PCA). Prior studies have demonstrated that linear autoencoders (LAEs) can recover the ordered, axis-aligned principal components of PCA by incorporating non-uniform $\ell_2$ regularization or by adjusting the loss function. However, these approaches become insufficient in the nonlinear setting, as the remaining variance cannot be properly captured independently of the nonlinear mapping. In this work, we propose a novel autoencoder framework that integrates non-uniform variance regularization with an isometric constraint. This design serves as a natural generalization of PCA, enabling the model to preserve key advantages, such as ordered representations and variance retention, while remaining effective for nonlinear dimensionality reduction tasks.
Problem

Research questions and friction points this paper is trying to address.

intrinsic dimension estimation
ordered representations
nonlinear autoencoder
principal component analysis
variance retention
Innovation

Methods, ideas, or system contributions that make the work stand out.

Principal Component Autoencoder
nonlinear dimensionality reduction
ordered latent representations
variance regularization
isometric constraint
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Li Shen
Professor of Informatics and Radiology, University of Pennsylvania Perelman School of Medicine
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