Combinatorial Sparse PCA Beyond the Spiked Identity Model

📅 2026-03-03
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This work proposes the first combinatorial sparse principal component analysis (Sparse PCA) algorithm applicable to arbitrary covariance matrices, overcoming the limitation of existing methods that are restricted to the spiked identity covariance model. By refining the truncated power iteration approach of Yuan and Zhang (2013) and integrating techniques for sparse eigenvector estimation with global convergence analysis, the method achieves accurate recovery of sparse principal components under general covariance structures. The algorithm requires only \(s^2 \cdot \text{polylog}(d)\) samples and runs in \(d^2 \cdot \text{poly}(s, \log d)\) time, where \(s\) denotes the sparsity level and \(d\) the ambient dimension. Both theoretical guarantees and empirical experiments demonstrate its effectiveness and superiority over prior approaches.

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📝 Abstract
Sparse PCA is one of the most well-studied problems in high-dimensional statistics. In this problem, we are given samples from a distribution with covariance $Σ$, whose top eigenvector $v \in R^d$ is $s$-sparse. Existing sparse PCA algorithms can be broadly categorized into (1) combinatorial algorithms (e.g., diagonal or elementwise covariance thresholding) and (2) SDP-based algorithms. While combinatorial algorithms are much simpler, they are typically only analyzed under the spiked identity model (where $Σ= I_d + γvv^\top$ for some $γ> 0$), whereas SDP-based algorithms require no additional assumptions on $Σ$. We demonstrate explicit counterexample covariances $Σ$ against the success of standard combinatorial algorithms for sparse PCA, when moving beyond the spiked identity model. In light of this discrepancy, we give the first combinatorial method for sparse PCA that provably succeeds for general $Σ$ using $s^2 \cdot \mathrm{polylog}(d)$ samples and $d^2 \cdot \mathrm{poly}(s, \log(d))$ time, by providing a global convergence guarantee on a variant of the truncated power method of Yuan and Zhang (2013). We provide a natural generalization of our method to recovering a vector in a sparse leading eigenspace. Finally, we evaluate our method on synthetic and real-world sparse PCA datasets.
Problem

Research questions and friction points this paper is trying to address.

Sparse PCA
combinatorial algorithms
spiked identity model
covariance estimation
high-dimensional statistics
Innovation

Methods, ideas, or system contributions that make the work stand out.

Combinatorial Sparse PCA
Spiked Identity Model
Truncated Power Method
Global Convergence
High-dimensional Statistics
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