Learning Hamiltonian Flow Maps: Mean Flow Consistency for Large-Timestep Molecular Dynamics

📅 2026-01-29
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This work addresses the challenge of efficiently simulating long-term dynamics in Hamiltonian systems, where traditional numerical integrators are constrained by stability requirements that necessitate extremely small time steps. The authors propose a machine learning–based approach that models the average evolution of phase space over a fixed time interval Δt, enabling stable updates with significantly larger step sizes. The key innovation lies in the introduction of a mean-flow consistency condition, which allows the model to be trained using only independent phase-space samples—without requiring trajectory data or future state information. This is the first method capable of directly leveraging the abundant trajectory-free data from modern machine-learned force fields (MLFFs). Experiments across diverse Hamiltonian systems demonstrate substantial increases in allowable time steps while maintaining computational costs for training and inference comparable to existing methods.

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📝 Abstract
Simulating the long-time evolution of Hamiltonian systems is limited by the small timesteps required for stable numerical integration. To overcome this constraint, we introduce a framework to learn Hamiltonian Flow Maps by predicting the mean phase-space evolution over a chosen time span, enabling stable large-timestep updates far beyond the stability limits of classical integrators. To this end, we impose a Mean Flow consistency condition for time-averaged Hamiltonian dynamics. Unlike prior approaches, this allows training on independent phase-space samples without access to future states, avoiding expensive trajectory generation. Validated across diverse Hamiltonian systems, our method in particular improves upon molecular dynamics simulations using machine-learned force fields (MLFF). Our models maintain comparable training and inference cost, but support significantly larger integration timesteps while trained directly on widely-available trajectory-free MLFF datasets.
Problem

Research questions and friction points this paper is trying to address.

Hamiltonian systems
molecular dynamics
large-timestep simulation
numerical integration stability
phase-space evolution
Innovation

Methods, ideas, or system contributions that make the work stand out.

Hamiltonian Flow Maps
Mean Flow Consistency
Large-Timestep Integration
Machine-Learned Force Fields
Trajectory-Free Training
Winfried Ripken
Winfried Ripken
TU Berlin
Machine LearningGraph Neural Networks
Michael Plainer
Michael Plainer
Free University of Berlin, Technical University of Berlin, ELIZA, BIFOLD
Machine LearningGenerative ModelsAI4Science
G
Gregor Lied
Technical University Berlin
T
Thorben Frank
Technical University Berlin
Oliver T. Unke
Oliver T. Unke
Senior Research Scientist at Google DeepMind
Machine LearningDeep LearningComputational ChemistryQuantum ChemistryMolecular Dynamics
S
Stefan Chmiela
Technical University Berlin
F
Frank No'e
Microsoft Research AI4Science
K
Klaus-Robert Muller
Technical University Berlin