The Generalized Random Access Problem for Linear Codes

2026-08-20

AI Summary

研究了DNA存储系统中多符号随机访问问题，通过引入新的参数和使用组合数学方法，提出了上下界，并对MDS编码器和单纯形编码器进行了具体分析。

Abstract

Random access is a central requirement in DNA-based storage systems: one would like to recover selected information symbols without sequencing the whole encoded object. A recent combinatorial model associates to a generator matrix $G\in F_q^{k\times n}$ the random variable $τ_i(G)$, measuring the number of sampled columns needed to recover the information vector $e_i$. We study the cardinality-based extremal and finite-geometric aspects of simultaneous multi-symbol recovery. For a nonempty set $I\subseteq[k]$, let $τ_I(G)$ denote the number of random column samples needed until all vectors $e_i$, $i\in I$, lie in the span of the observed columns. This variable interpolates between the singleton random access problem and the full-recovery problem underlying coverage depth. For each $m$, we introduce uniform worst-case and average parameters over all requested sets $I$ with $|I|=m$. Using the known subset-counting formula for $E[τ_I(G)]$, we establish general upper and lower bounds for these parameters. In particular, the lower bounds are expressed through order statistics of the singleton recovery variables and specialize to the known singleton bounds when $m=1$. For systematic MDS encoders, we record an equivalent form of the known multi-symbol expectation formula and derive monotonicity and asymptotic consequences. For simplex encoders in arbitrary dimension, we obtain closed formulae in terms of Gaussian binomial coefficients; the full-recovery endpoint agrees with the known coverage-depth formula for simplex codes. Finally, in dimension three we study balanced quasi-arcs and compare their values with the simplex and MDS benchmarks.

Problem

• Random Access
• Linear Codes
• DNA-based Storage
• Multi-symbol Recovery
• Coverage Depth

Innovation

• multi-symbol recovery
• uniform worst-case and average parameters
• Gaussian binomial coefficients
• balanced quasi-arcs