Glioma C6: A Novel Dataset for Training and Benchmarking Cell Segmentation
High-quality annotated data for glioma C6 cell instance segmentation is scarce, hindering robust model development and evaluation. Method: We introduce C6Seg—the first open-source, biologist-curated instance segmentation dataset for C6 cells—comprising 75 phase-contrast microscopy images with over 12,000 pixel-accurate cell masks. C6Seg uniquely incorporates morphological classification labels and subcellular annotations (soma vs. pseudopodia), and spans controlled conditions and multi-condition imaging environments to enhance generalizability. Contribution/Results: Using C6Seg, we systematically benchmark state-of-the-art models (e.g., Mask R-CNN, U-Net), revealing performance bottlenecks in highly clustered and small-object scenarios. Transfer learning on C6Seg yields an 8.2% mAP improvement, validating its utility for model refinement and benchmark establishment. C6Seg thus provides a reproducible, high-fidelity resource for quantitative analysis of brain tumor cells.